PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g09200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 283aa    MW: 30409.6 Da    PI: 6.3418
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g09200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.82.5e-2711042489
              TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............................ 88 
                      ++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s++ss+s+ s +                            
  Vradi03g09200.1   1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISHRSSGSSMSVPsqlrsnyfnsnfslqprrslflentnts 94 
                      9**********************************************99986666666666544445555556666666666666666644444 PP

              TCP  89 .........k 89 
                               +
  Vradi03g09200.1  95 ttllnfqsnN 104
                      4444443332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-291143IPR005333Transcription factor, TCP
PROSITE profilePS5136920.799139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISHRSSG  60
SSMSVPSQLR SNYFNSNFSL QPRRSLFLEN TNTSTTLLNF QSNNPISTSI FQPKHELRDS  120
SSLDLSSENN EEGLGRKRRP LEQDLSSTMQ HQVGSYLMQS SSSGTIPASH AQIPANIWMV  180
ANSNSQGVSG EAPLWTFPGV SNSALYRGNM SSGLHFMNFP TPMALLPGQQ LGSSGIGGNM  240
NEGHLSMLSG LNPYRTVIGV SESQASESQS HHGGSEDRHD DN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495703.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z002e-45TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A0S3RG540.0A0A0S3RG54_PHAAN; Uncharacterized protein
STRINGGLYMA04G33771.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.19e-34TCP family protein